SOFTWARE

Raines Lab Scientific Community

Sitetack

Purpose: Predict post-translational modifications (PTMs) in any protein with an algorithm that incorporates known PTMs.

Website: https://sitetack.net

Reference: Sitetack: A deep learning model that improves PTM prediction by using known PTMs. Clair S. Gutierrez, Alia A. Kassim, Benjamin D. Gutierrez, and Ronald T. Raines (2024). Bioinformatics 40, btae602. [PubMed] [PDF] [SuppInfo]

PTENpred

Purpose: Predict phenotypes that result from a change in the human PTEN protein.

GibHub: https://github.com/seanjohnite/PTENpred

Reference: PTENpred: Designer protein impact predictor for PTEN-related disorders. Sean B. Johnston and Ronald T. Raines (2016). Journal of Computational Biology 23, 969–975. [PubMed] [PDF] [Supporting Information]